[Gluster-users] Geo-replication: Entry not present on master. Fixing gfid mismatch in slave
David Cunningham
dcunningham at voisonics.com
Sun Jun 7 23:58:47 UTC 2020
Hi Strahil,
The CPU is still quite high, with "top" regularly showing 100% CPU usage by
that process. However it's not clear whether this is really a problem, or
if it's just normal geo-replication activity. While CPU usage was not
previously as high on this server, it's not clear whether GlusterFS might
have made this the "push" node for geo-replication when it used to be some
other server. Having said that, no other server shows a sudden drop in CPU
usage.
Ideally we could find out what the gsyncd process is doing, and therefore
whether it's expected or not. Any ideas on that? We did set the log level
to DEBUG as Sunny suggested.
Looking at
/var/log/glusterfs/geo-replication-slaves/gvol0_nvfs10_gvol0/mnt-cafs30-nodirectwritedata-gluster-gvol0.log
on the geo-replication slave, we have a lot of lines like the following
logged.
[2020-06-06 00:32:43.155856] W [fuse-bridge.c:897:fuse_attr_cbk]
0-glusterfs-fuse: 875853: STAT()
/.gfid/25d78a6c-41a9-4364-84a8-31f5571223ac => -1 (Stale file handle)
[2020-06-06 00:32:43.219759] W [fuse-bridge.c:897:fuse_attr_cbk]
0-glusterfs-fuse: 875923: STAT()
/.gfid/25d78a6c-41a9-4364-84a8-31f5571223ac => -1 (Stale file handle)
[2020-06-06 00:32:43.280357] W [fuse-bridge.c:897:fuse_attr_cbk]
0-glusterfs-fuse: 876001: STAT()
/.gfid/25d78a6c-41a9-4364-84a8-31f5571223ac => -1 (Stale file handle)
The message "E [MSGID: 109040]
[dht-helper.c:1332:dht_migration_complete_check_task] 0-gvol0-dht:
/.gfid/25d78a6c-41a9-4364-84a8-31f5571223ac: failed to lookup the file on
gvol0-dht [Stale file handle]" repeated 9 times between [2020-06-06
00:32:42.689780] and [2020-06-06 00:32:43.280322]
[2020-06-06 09:03:03.660956] E [MSGID: 109040]
[dht-helper.c:1332:dht_migration_complete_check_task] 0-gvol0-dht:
/.gfid/decdd552-d58b-4ddf-b27a-0da9a6fbc38b: failed to lookup the file on
gvol0-dht [Stale file handle]
[2020-06-06 09:03:03.661057] W [fuse-bridge.c:897:fuse_attr_cbk]
0-glusterfs-fuse: 965375: STAT()
/.gfid/decdd552-d58b-4ddf-b27a-0da9a6fbc38b => -1 (Stale file handle)
[2020-06-06 09:03:10.258798] E [MSGID: 109040]
[dht-helper.c:1332:dht_migration_complete_check_task] 0-gvol0-dht:
/.gfid/1d90e129-d40f-4ca4-bea8-0bb3c4c7985a: failed to lookup the file on
gvol0-dht [Stale file handle]
[2020-06-06 09:03:10.258880] W [fuse-bridge.c:897:fuse_attr_cbk]
0-glusterfs-fuse: 969455: STAT()
/.gfid/1d90e129-d40f-4ca4-bea8-0bb3c4c7985a => -1 (Stale file handle)
[2020-06-06 09:09:41.259362] E [MSGID: 109040]
[dht-helper.c:1332:dht_migration_complete_check_task] 0-gvol0-dht:
/.gfid/740efff6-74dd-45be-847f-66919d1179e0: failed to lookup the file on
gvol0-dht [Stale file handle]
[2020-06-06 09:09:41.259458] W [fuse-bridge.c:897:fuse_attr_cbk]
0-glusterfs-fuse: 1040904: STAT()
/.gfid/740efff6-74dd-45be-847f-66919d1179e0 => -1 (Stale file handle)
Could these errors be part of the problem?
Thanks again.
On Sat, 6 Jun 2020 at 21:21, Strahil Nikolov <hunter86_bg at yahoo.com> wrote:
> Hey David,
>
> can you check the old logs for gfid mismatch and get a list of files that
> were causing the high cpu .
> Maybe they are related somehow (maybe created by the same software ,
> same client version or something else) which could help about that.
>
> Also take a look in geo-replication-slave logs.
>
> Does the issue still occurs ?
>
> Best Regards,
> Strahil Nikolov
>
> На 6 юни 2020 г. 1:21:55 GMT+03:00, David Cunningham <
> dcunningham at voisonics.com> написа:
> >Hi Sunny and Strahil,
> >
> >Thanks again for your responses. We don't have a lot of renaming
> >activity -
> >maybe some, but not a lot. We do have files which are open for writing
> >for
> >quite a while - they're call recordings being written as the call
> >happens.
> >
> >We've installed GlusterFS using the Ubuntu packages and I'd really like
> >to
> >avoid compiling and applying patches.
> >
> >After enabling DEBUG the log at
> >/var/log/glusterfs/geo-replication/gvol0_nvfs10_gvol0/gsyncd.log
> >doesn't
> >seem to show anything very unusual:
> >
> >[2020-06-03 02:49:01.992177] I [master(worker
> >/nodirectwritedata/gluster/gvol0):1384:process] _GMaster: Entry Time
> >Taken
> > MKD=0 MKN=0 LIN=0 SYM=0 REN=0 RMD=0CRE=0 duration=0.0000
> >UNL=0
> >[2020-06-03 02:49:01.992465] I [master(worker
> >/nodirectwritedata/gluster/gvol0):1394:process] _GMaster: Data/Metadata
> >Time Taken SETA=0 SETX=0
> >meta_duration=0.0000data_duration=13.0954
> > DATA=8 XATT=0
> >[2020-06-03 02:49:01.992863] I [master(worker
> >/nodirectwritedata/gluster/gvol0):1404:process] _GMaster: Batch
> >Completed
> >changelog_end=1591152508 entry_stime=(1591152352, 0)
> >changelog_start=1591152494 stime=(1591152507, 0)
> >duration=13.1077
> > num_changelogs=2 mode=live_changelog
> >[2020-06-03 02:49:02.958687] D [repce(worker
> >/nodirectwritedata/gluster/gvol0):196:push] RepceClient: call
> >19017:139678812452608:1591152542.96 keep_alive({'version': (1, 0),
> >'retval': 0, 'uuid': '8ee85fae-f3aa-4285-ad48-67a1dc17ed73', 'timeout':
> >1591152662, 'volume_mark': (1583043396, 161632)},) ...
> >[2020-06-03 02:49:02.979139] D [repce(worker
> >/nodirectwritedata/gluster/gvol0):216:__call__] RepceClient: call
> >19017:139678812452608:1591152542.96 keep_alive -> 28
> >[2020-06-03 02:49:06.998127] D [master(worker
> >/nodirectwritedata/gluster/gvol0):551:crawlwrap] _GMaster: ... crawl
> >#114
> >done, took 30.180089 seconds
> >[2020-06-03 02:49:07.10132] D [repce(worker
> >/nodirectwritedata/gluster/gvol0):196:push] RepceClient: call
> >19017:139679441716992:1591152547.01 scan() ...
> >[2020-06-03 02:49:07.10781] D [repce(worker
> >/nodirectwritedata/gluster/gvol0):216:__call__] RepceClient: call
> >19017:139679441716992:1591152547.01 scan -> None
> >[2020-06-03 02:49:07.10935] D [repce(worker
> >/nodirectwritedata/gluster/gvol0):196:push] RepceClient: call
> >19017:139679441716992:1591152547.01 getchanges() ...
> >[2020-06-03 02:49:07.11579] D [repce(worker
> >/nodirectwritedata/gluster/gvol0):216:__call__] RepceClient: call
> >19017:139679441716992:1591152547.01 getchanges ->
>
> >['/var/lib/misc/gluster/gsyncd/gvol0_nvfs10_gvol0/nodirectwritedata-gluster-gvol0/.processing/CHANGELOG.1591152522']
> >[2020-06-03 02:49:07.11720] I [master(worker
> >/nodirectwritedata/gluster/gvol0):1470:crawl] _GMaster: slave's time
> >stime=(1591152507, 0)
> >
> >Am I looking in the right place to find out what that gsyncd.py process
> >is
> >doing?
> >
> >
> >On Tue, 2 Jun 2020 at 21:58, Sunny Kumar <sunkumar at redhat.com> wrote:
> >
> >> Hi David,
> >>
> >> You haven't answered my previous question regarding the type of your
> >> workload.
> >> ---
> >> You can use the below command to enable debug log.
> >>
> >> `gluster vol geo-rep <mastervol> <slavehost>::<slavevol> config
> >log-level
> >> DEBUG`
> >>
> >> and after capturing log again switch back to info mode:
> >>
> >> `gluster vol geo-rep <mastervol> <slavehost>::<slavevol> config
> >log-level
> >> INFO`
> >>
> >> Please share the debug log and geo-rep config to debug further:
> >> for config:
> >>
> >> `gluster vol geo-rep <mastervol> <slavehost>::<slavevol> config`
> >>
> >> /sunny
> >>
> >>
> >> On Tue, Jun 2, 2020 at 10:18 AM Strahil Nikolov
> ><hunter86_bg at yahoo.com>
> >> wrote:
> >> >
> >> > Hi David,
> >> >
> >> > in which log do you see the entries ?
> >> >
> >> > I think I got an explanation why you see the process only on one
> >of the
> >> master nodes - geo-rep session is established from only 1 master
> >node /I
> >> hope someone corrects me if I'm wrong/ to one slave node. Thus it
> >will be
> >> natural to see the high CPU usage on only 1 master node in your
> >situation.
> >> >
> >> > Do you see anything else in the :
> >> var/log/glusterfs/geo-replication/<logs> (master nodes) or in
> >> /var/log/glusterfs/geo-replication-slaves (slaves) that could hint of
> >the
> >> exact issue. I have a vague feeling that that python script is
> >constantly
> >> looping over some data causing the CPU hog.
> >> >
> >> > Sadly, I can't find an instruction for increasing the log level of
> >the
> >> geo rep log .
> >> >
> >> >
> >> > Best Regards,
> >> > Strahil Nikolov
> >> >
> >> >
> >> > На 2 юни 2020 г. 6:14:46 GMT+03:00, David Cunningham <
> >> dcunningham at voisonics.com> написа:
> >> > >Hi Strahil and Sunny,
> >> > >
> >> > >Thank you for the replies. I checked the gfid on the master and
> >slaves
> >> > >and
> >> > >they are the same. After moving the file away and back again it
> >doesn't
> >> > >seem to be having the issue with that file any more.
> >> > >
> >> > >We are still getting higher CPU usage on one of the master nodes
> >than
> >> > >the
> >> > >others. It logs this every few seconds:
> >> > >
> >> > >[2020-06-02 03:10:15.637815] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1384:process] _GMaster: Entry
> >Time
> >> > >Taken
> >> > > MKD=0 MKN=0 LIN=0 SYM=0 REN=0 RMD=0CRE=0
> >duration=0.0000
> >> > >UNL=0
> >> > >[2020-06-02 03:10:15.638010] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1394:process] _GMaster:
> >Data/Metadata
> >> > >Time Taken SETA=0 SETX=0
> >> > >meta_duration=0.0000data_duration=12.7878
> >> > > DATA=4 XATT=0
> >> > >[2020-06-02 03:10:15.638286] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1404:process] _GMaster: Batch
> >> > >Completed
> >> > >changelog_end=1591067378 entry_stime=(1591067167, 0)
> >> > >changelog_start=1591067364 stime=(1591067377, 0)
> >> > >duration=12.8068
> >> > > num_changelogs=2 mode=live_changelog
> >> > >[2020-06-02 03:10:20.658601] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1470:crawl] _GMaster: slave's
> >time
> >> > > stime=(1591067377, 0)
> >> > >[2020-06-02 03:10:34.21799] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1954:syncjob] Syncer: Sync Time
> >Taken
> >> > > duration=0.3826 num_files=8 job=1 return_code=0
> >> > >[2020-06-02 03:10:46.440535] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1384:process] _GMaster: Entry
> >Time
> >> > >Taken
> >> > > MKD=0 MKN=0 LIN=0 SYM=0 REN=1 RMD=0CRE=2
> >duration=0.1314
> >> > >UNL=1
> >> > >[2020-06-02 03:10:46.440809] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1394:process] _GMaster:
> >Data/Metadata
> >> > >Time Taken SETA=0 SETX=0
> >> > >meta_duration=0.0000data_duration=13.0171
> >> > > DATA=14 XATT=0
> >> > >[2020-06-02 03:10:46.441205] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1404:process] _GMaster: Batch
> >> > >Completed
> >> > >changelog_end=1591067420 entry_stime=(1591067419, 0)
> >> > >changelog_start=1591067392 stime=(1591067419, 0)
> >> > >duration=13.0322
> >> > > num_changelogs=3 mode=live_changelog
> >> > >[2020-06-02 03:10:51.460925] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1470:crawl] _GMaster: slave's
> >time
> >> > > stime=(1591067419, 0)
> >> > >
> >> > >[2020-06-02 03:11:04.448913] I [master(worker
> >> > >/nodirectwritedata/gluster/gvol0):1954:syncjob] Syncer: Sync Time
> >Taken
> >> > >duration=0.3466 num_files=3 job=1 return_code=0
> >> > >
> >> > >Whereas the other master nodes only log this:
> >> > >
> >> > >[2020-06-02 03:11:33.886938] I [gsyncd(config-get):308:main]
> ><top>:
> >> > >Using
> >> > >session config file
> >> >
> >>path=/var/lib/glusterd/geo-replication/gvol0_nvfs10_gvol0/gsyncd.conf
> >> > >[2020-06-02 03:11:33.993175] I [gsyncd(status):308:main] <top>:
> >Using
> >> > >session config file
> >> >
> >>path=/var/lib/glusterd/geo-replication/gvol0_nvfs10_gvol0/gsyncd.conf
> >> > >
> >> > >Can anyone help with what might cause the high CPU usage on one
> >master
> >> > >node? The process is this one, and is using 70-100% of CPU:
> >> > >
> >> > >python2
> >/usr/lib/x86_64-linux-gnu/glusterfs/python/syncdaemon/gsyncd.py
> >> > >worker gvol0 nvfs10::gvol0 --feedback-fd 15 --local-path
> >> > >/nodirectwritedata/gluster/gvol0 --local-node cafs30
> >--local-node-id
> >> > >b7521445-ee93-4fed-8ced-6a609fa8c7d4 --slave-id
> >> > >cdcdb210-839c-4306-a4dc-e696b165ed17 --rpc-fd 12,11,9,13
> >--subvol-num 1
> >> > >--resource-remote nvfs30 --resource-remote-id
> >> > >1e698ccd-aeec-4ec4-96fe-383da8fc3b78
> >> > >
> >> > >Thank you in advance!
> >> > >
> >> > >
> >> > >
> >> > >
> >> > >On Sat, 30 May 2020 at 20:20, Strahil Nikolov
> ><hunter86_bg at yahoo.com>
> >> > >wrote:
> >> > >
> >> > >> Hey David,
> >> > >>
> >> > >> for me a gfid mismatch means that the file was
> >replaced/recreated
> >> > > -
> >> > >> just like vim in linux does (and it is expected for config
> >file).
> >> > >>
> >> > >> Have you checked the gfid of the file on both source and
> >> > >destination,
> >> > >> do they really match or they are different ?
> >> > >>
> >> > >> What happens when you move away the file from the slave ,
> >does it
> >> > >fixes
> >> > >> the issue ?
> >> > >>
> >> > >> Best Regards,
> >> > >> Strahil Nikolov
> >> > >>
> >> > >> На 30 май 2020 г. 1:10:56 GMT+03:00, David Cunningham <
> >> > >> dcunningham at voisonics.com> написа:
> >> > >> >Hello,
> >> > >> >
> >> > >> >We're having an issue with a geo-replication process with
> >unusually
> >> > >> >high
> >> > >> >CPU use and giving "Entry not present on master. Fixing gfid
> >> > >mismatch
> >> > >> >in
> >> > >> >slave" errors. Can anyone help on this?
> >> > >> >
> >> > >> >We have 3 GlusterFS replica nodes (we'll call the master),
> >which
> >> > >also
> >> > >> >push
> >> > >> >data to a remote server (slave) using geo-replication. This has
> >been
> >> > >> >running fine for a couple of months, but yesterday one of the
> >master
> >> > >> >nodes
> >> > >> >started having unusually high CPU use. It's this process:
> >> > >> >
> >> > >> >root at cafs30:/var/log/glusterfs# ps aux | grep 32048
> >> > >> >root 32048 68.7 0.6 1843140 845756 ? Rl 02:51
> >493:51
> >> > >> >python2
> >> > >> >/usr/lib/x86_64-linux-gnu/glusterfs/python/syncdaemon/gsyncd.py
> >> > >worker
> >> > >> >gvol0 nvfs10::gvol0 --feedback-fd 15 --local-path
> >> > >> >/nodirectwritedata/gluster/gvol0 --local-node cafs30
> >--local-node-id
> >> > >> >b7521445-ee93-4fed-8ced-6a609fa8c7d4 --slave-id
> >> > >> >cdcdb210-839c-4306-a4dc-e696b165ed17 --rpc-fd 12,11,9,13
> >> > >--subvol-num 1
> >> > >> >--resource-remote nvfs30 --resource-remote-id
> >> > >> >1e698ccd-aeec-4ec4-96fe-383da8fc3b78
> >> > >> >
> >> > >> >Here's what is being logged in
> >> > >>
> >>/var/log/glusterfs/geo-replication/gvol0_nvfs10_gvol0/gsyncd.log:
> >> > >> >
> >> > >> >[2020-05-29 21:57:18.843524] I [master(worker
> >> > >> >/nodirectwritedata/gluster/gvol0):1470:crawl] _GMaster: slave's
> >time
> >> > >> > stime=(1590789408, 0)
> >> > >> >[2020-05-29 21:57:30.626172] I [master(worker
> >> > >>
> >>/nodirectwritedata/gluster/gvol0):813:fix_possible_entry_failures]
> >> > >> >_GMaster: Entry not present on master. Fixing gfid mismatch in
> >> > >slave.
> >> > >> >Deleting the entry retry_count=1 entry=({u'uid': 108,
> >u'gfid':
> >> > >> >u'7c0b75e5-d8b7-454f-8010-112d613c599e', u'gid': 117, u'mode':
> >> > >33204,
> >> > >> >u'entry':
> >> > >> >u'.gfid/c5422396-1578-4b50-a29d-315be2a9c5d8/00a859f7xxxx.cfg',
> >> > >> >u'op': u'CREATE'}, 17, {u'slave_isdir': False,
> >u'gfid_mismatch':
> >> > >True,
> >> > >> >u'slave_name': None, u'slave_gfid':
> >> > >> >u'ec4b0ace-2ec4-4ea5-adbc-9f519b81917c', u'name_mismatch':
> >False,
> >> > >> >u'dst':
> >> > >> >False})
> >> > >> >[2020-05-29 21:57:30.627893] I [master(worker
> >> > >>
> >>/nodirectwritedata/gluster/gvol0):813:fix_possible_entry_failures]
> >> > >> >_GMaster: Entry not present on master. Fixing gfid mismatch in
> >> > >slave.
> >> > >> >Deleting the entry retry_count=1 entry=({u'uid': 108,
> >u'gfid':
> >> > >> >u'a4d52e40-2e2f-4885-be5f-65fe95a8ebd7', u'gid': 117, u'mode':
> >> > >33204,
> >> > >> >u'entry':
> >> > >>
> >> >
> >>>u'.gfid/f857c42e-22f1-4ce4-8f2e-13bdadedde45/polycom_00a859f7xxxx.cfg',
> >> > >> >u'op': u'CREATE'}, 17, {u'slave_isdir': False,
> >u'gfid_mismatch':
> >> > >True,
> >> > >> >u'slave_name': None, u'slave_gfid':
> >> > >> >u'ece8da77-b5ea-45a7-9af7-7d4d8f55f74a', u'name_mismatch':
> >False,
> >> > >> >u'dst':
> >> > >> >False})
> >> > >> >[2020-05-29 21:57:30.629532] I [master(worker
> >> > >>
> >>/nodirectwritedata/gluster/gvol0):813:fix_possible_entry_failures]
> >> > >> >_GMaster: Entry not present on master. Fixing gfid mismatch in
> >> > >slave.
> >> > >> >Deleting the entry retry_count=1 entry=({u'uid': 108,
> >u'gfid':
> >> > >> >u'3c525ad8-aeb2-46b6-9c41-7fb4987916f8', u'gid': 117, u'mode':
> >> > >33204,
> >> > >> >u'entry':
> >> > >>
> >> >
> >>
>
> >>>u'.gfid/f857c42e-22f1-4ce4-8f2e-13bdadedde45/00a859f7xxxx-directory.xml',
> >> > >> >u'op': u'CREATE'}, 17, {u'slave_isdir': False,
> >u'gfid_mismatch':
> >> > >True,
> >> > >> >u'slave_name': None, u'slave_gfid':
> >> > >> >u'06717b5a-d842-495d-bd25-aab9cd454490', u'name_mismatch':
> >False,
> >> > >> >u'dst':
> >> > >> >False})
> >> > >> >[2020-05-29 21:57:30.659123] I [master(worker
> >> > >> >/nodirectwritedata/gluster/gvol0):942:handle_entry_failures]
> >> > >_GMaster:
> >> > >> >Sucessfully fixed entry ops with gfid mismatch
> >retry_count=1
> >> > >> >[2020-05-29 21:57:30.659343] I [master(worker
> >> > >> >/nodirectwritedata/gluster/gvol0):1194:process_change]
> >_GMaster:
> >> > >Retry
> >> > >> >original entries. count = 1
> >> > >> >[2020-05-29 21:57:30.725810] I [master(worker
> >> > >> >/nodirectwritedata/gluster/gvol0):1197:process_change]
> >_GMaster:
> >> > >> >Sucessfully fixed all entry ops with gfid mismatch
> >> > >> >[2020-05-29 21:57:31.747319] I [master(worker
> >> > >> >/nodirectwritedata/gluster/gvol0):1954:syncjob] Syncer: Sync
> >Time
> >> > >Taken
> >> > >> >duration=0.7409 num_files=18 job=1 return_code=0
> >> > >> >
> >> > >> >We've verified that the files like polycom_00a859f7xxxx.cfg
> >referred
> >> > >to
> >> > >> >in
> >> > >> >the error do exist on the master nodes and slave.
> >> > >> >
> >> > >> >We found this bug fix:
> >> > >> >https://bugzilla.redhat.com/show_bug.cgi?id=1642865
> >> > >> >
> >> > >> >However that fix went in 5.1, and we're running 5.12 on the
> >master
> >> > >> >nodes
> >> > >> >and slave. A couple of GlusterFS clients connected to the
> >master
> >> > >nodes
> >> > >> >are
> >> > >> >running 5.13.
> >> > >> >
> >> > >> >Would anyone have any suggestions? Thank you in advance.
> >> > >>
> >> > ________
> >> >
> >> >
> >> >
> >> > Community Meeting Calendar:
> >> >
> >> > Schedule -
> >> > Every 2nd and 4th Tuesday at 14:30 IST / 09:00 UTC
> >> > Bridge: https://bluejeans.com/441850968
> >> >
> >> > Gluster-users mailing list
> >> > Gluster-users at gluster.org
> >> > https://lists.gluster.org/mailman/listinfo/gluster-users
> >>
> >>
>
--
David Cunningham, Voisonics Limited
http://voisonics.com/
USA: +1 213 221 1092
New Zealand: +64 (0)28 2558 3782
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